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Poster
Neuropathic Pain Diagnosis Simulator for Causal Discovery Algorithm Evaluation
Ruibo Tu · Kun Zhang · Bo Bertilson · Hedvig Kjellstrom · Cheng Zhang

Wed Dec 11 05:00 PM -- 07:00 PM (PST) @ East Exhibition Hall B + C #122
in Data, Challenges, Implementations, and Software -- Benchmarks »

Discovery of causal relations from observational data is essential for many disciplines of science and real-world applications. However, unlike other machine learning algorithms, whose development has been greatly fostered by a large amount of available benchmark datasets, causal discovery algorithms are notoriously difficult to be systematically evaluated because few datasets with known ground-truth causal relations are available. In this work, we handle the problem of evaluating causal discovery algorithms by building a flexible simulator in the medical setting. We develop a neuropathic pain diagnosis simulator, inspired by the fact that the biological processes of neuropathic pathophysiology are well studied with well-understood causal influences. Our simulator exploits the causal graph of the neuropathic pain pathology and its parameters in the generator are estimated from real-life patient cases. We show that the data generated from our simulator have similar statistics as real-world data. As a clear advantage, the simulator can produce infinite samples without jeopardizing the privacy of real-world patients. Our simulator provides a natural tool for evaluating various types of causal discovery algorithms, including those to deal with practical issues in causal discovery, such as unknown confounders, selection bias, and missing data. Using our simulator, we have evaluated extensively causal discovery algorithms under various settings.

Keywords: Causal Inference · Data Sets or Data Repositories · Data, Challenges, Implementations, and Software · Applications -> Health; Probabilistic Methods

Author Information

Ruibo Tu (KTH Royal Institute of Technology)
Kun Zhang (CMU)
Bo Bertilson (KI Karolinska Institutet)
Hedvig Kjellstrom (KTH Royal Institute of Technology)
Cheng Zhang (Microsoft Research, Cambridge, UK)

Cheng Zhang is a principal researcher at Microsoft Research Cambridge, UK. She leads the Data Efficient Decision Making (Project Azua) team in Microsoft. Before joining Microsoft, she was with the statistical machine learning group of Disney Research Pittsburgh, located at Carnegie Mellon University. She received her Ph.D. from the KTH Royal Institute of Technology. She is interested in advancing machine learning methods, including variational inference, deep generative models, and sequential decision-making under uncertainty; and adapting machine learning to social impactful applications such as education and healthcare. She co-organized the Symposium on Advances in Approximate Bayesian Inference from 2017 to 2019.

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