Timezone: »

 
Attention Shift: Interpretability Study of Texture-based Data Augmentation in Training U-Net Models for Brain Image Segmentation
Suhang You · Mauricio Reyes

Texture smoothing has recently become a promising data augmentation method to enhance the performance of deep learning segmentation methods in medical image analysis. However, a deeper understanding of this phenomenon has not been investigated. In this study, we investigated this phenomenon using a controlled experimental setting, using datasets from the Human Connectome Project, in order to mitigate the inhomogeneity of data confounders to the network, and investigate possible explanations as to why model performance changes when applying different levels of total variation smoothing during data augmentation. Through experiments we confirm previous findings regarding the benefits of smoothing during data augmentation, but further report that the regime of improvement is limited and it changes in relation to the selected imaging protocol. We also found that smoothing during data augmentation produces a spatial attention shift also associated with different performance levels of the trained segmentation model.

Author Information

Suhang You (ARTORG, University of Bern)
Mauricio Reyes (University of Bern)

More from the Same Authors

  • 2022 : Metrics Reloaded »
    Annika Reinke · Lena Maier-Hein · Patrick Scholz · Minu D. Tizabi · Evangelia Christodoulou · Ben Glocker · Fabian Isensee · Jens Kleesiek · Michal Kozubek · Mauricio Reyes · Michael A. Riegler · Manuel Wiesenfarth · Michael Baumgartner · Matthias Eisenmann · Doreen Heckmann-Nötzel · A. Kavur · Tim Rädsch · Laura Acion · Michela Antonelli · Tal Arbel · Spyridon Bakas · Pete Bankhead · Arriel Benis · Florian Buettner · M. Jorge Cardoso · Veronika Cheplygina · Beth Cimini · Gary Collins · Keyvan Farahani · Luciana Ferrer · Adrian Galdran · Bram van Ginneken · Robert Haase · Daniel Hashimoto · Michael Hoffman · Merel Huisman · Pierre Jannin · Charles Kahn · Dagmar Kainmueller · Alexandros Karargyris · Bernhard Kainz · Alan Karthikesalingam · Hannes Kenngott · Florian Kofler · Annette Kopp-Schneider · Anna Kreshuk · Tahsin Kurc · Bennett Landman · Geert Litjens · Amin Madani · Klaus H. Maier-Hein · Anne Martel · Peter Mattson · Erik Meijering · Bjoern Menze · David Moher · Karel G.M. Moons · Henning Mueller · Brennan Nichyporuk · Felix Nickel · Jens Petersen · Nasir Rajpoot · Nicola Rieke · Julio Saez-Rodriguez · Clarisa Sanchez · Shravya Shetty · Maarten van Smeden · Carole Sudre · Ronald Summers · Abdel Aziz Taha · Sotirios Tsaftaris · Ben Ben Van Calster · Gaël Varoquaux · Paul Jäger
  • 2022 : How do 3D image segmentation networks behave across the context versus foreground ratio trade-off? »
    Amith Kamath · Yannick Suter · Suhang You · Michael Mueller · Jonas Willmann · Nicolaus Andratschke · Mauricio Reyes