Workshop

Joint Protein Sequence-Structure Co-Design via Equivariant Diffusion
Ria Vinod

Poster

Thu 9:00

PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding
Minghao Xu · Zuobai Zhang · Jiarui Lu · Zhaocheng Zhu · Yangtian Zhang · Ma Chang · Runcheng Liu · Jian Tang

Workshop

Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models
Namrata Anand · Tudor Achim

Workshop

Masked inverse folding with sequence transfer for protein representation learning
Kevin Yang · Niccoló Zanichelli · Hugh Yeh

Workshop

A Benchmark Framework for Evaluating Structure-to-Sequence Models for Protein Design
Jeffrey Chan · Seyone Chithrananda · David Brookes · Sam Sinai

Workshop

Ligand-aware protein sequence design using protein self contacts
Jody Mou · Benjamin Fry · Chun-Chen Yao · Nicholas Polizzi

Workshop

EvoOpt: an MSA-guided, fully unsupervised sequence optimization pipeline for protein design
Hideki Yamaguchi · Yutaka Saito

Workshop

Sat 7:15

Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models
Namrata Anand · Tudor Achim

Workshop

TranceptEVE: Combining Family-specific and Family-agnostic Models of Protein Sequences for Improved Fitness Prediction
Pascal Notin · Lodevicus van Niekerk · Aaron Kollasch · Daniel Ritter · Yarin Gal · Debora Marks

Workshop

Protein Sequence Design in a Latent Space via Model-based Reinforcement Learning
Minji Lee · Luiz Felipe Vecchietti · Hyunkyu Jung · Hyunjoo Ro · Ho Min Kim · Meeyoung Cha

Workshop

Sat 12:20

Seq2MSA: A Language Model for Protein Sequence Diversification
Pascal Sturmfels · Roshan Rao · Robert Verkuil · Zeming Lin · Tom Sercu · Adam Lerer · Alex Rives

Workshop

Training self-supervised peptide sequence models on artificially chopped proteins
Gil Sadeh · Zichen Wang · Jasleen Grewal · Huzefa Rangwala · Layne Price