Reward Machines provide an automata-inspired structure for specifying instructions, safety constraints, and other temporally extended reward-worthy behavior. By exposing complex reward function structure, they enable counterfactual learning updates that have resulted in impressive sample efficiency gains. While Reward Machines have been employed in both tabular and deep RL settings, they have typically relied on a ground-truth interpretation of the domain-specific vocabulary that form the building blocks of the reward function. Such ground-truth interpretations can be elusive in many real-world settings, due in part to partial observability or noisy sensing. In this paper, we explore the use of Reward Machines for Deep RL in noisy and uncertain environments. We characterize this problem as a POMDP and propose a suite of RL algorithms that leverage task structure under uncertain interpretation of domain-specific vocabulary. Theoretical analysis exposes pitfalls in naive approaches to this problem, while experimental results show that our algorithms successfully leverage task structure to improve performance under noisy interpretations of the vocabulary. Our results provide a general framework for exploiting Reward Machines in partially observable environments.