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Workshop
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Predicting Immune Escape with Pretrained Protein Language Model Embeddings
Kyle Swanson · Howard Chang · James Zou
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Poster
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Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures
Shitong Luo · Yufeng Su · Xingang Peng · Sheng Wang · Jian Peng · Jianzhu Ma
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Poster
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Wed 14:00
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Exploring evolution-aware & -free protein language models as protein function predictors
Mingyang Hu · Fajie Yuan · Kevin Yang · Fusong Ju · Jin Su · Hui Wang · Fei Yang · Qiuyang Ding
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Workshop
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A Benchmark Framework for Evaluating Structure-to-Sequence Models for Protein Design
Jeffrey Chan · Seyone Chithrananda · David Brookes · Sam Sinai
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Workshop
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The geometry of hidden representations of protein language models
Lucrezia Valeriani · Francesca Cuturello · Alessio Ansuini · Alberto Cazzaniga
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Workshop
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Large-scale self-supervised pre-training on protein three-dimensional structures
Ilya Senatorov
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Poster
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Tue 14:00
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Graphein - a Python Library for Geometric Deep Learning and Network Analysis on Biomolecular Structures and Interaction Networks
Arian Jamasb · Ramon Viñas Torné · Eric Ma · Yuanqi Du · Charles Harris · Kexin Huang · Dominic Hall · Pietro Lió · Tom Blundell
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Workshop
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3D Reconstruction of Protein Complex Structures Using Synthesized Multi-View AFM Images
Jaydeep Rade · Soumik Sarkar · Anwesha Sarkar · Adarsh Krishnamurthy
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Workshop
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Pretrained protein language model transfer learning: is the final layer representation what we want?
Francesca-Zhoufan Li · Ava Soleimany · Kevin Yang · Alex X Lu
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Workshop
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Training self-supervised peptide sequence models on artificially chopped proteins
Gil Sadeh · Zichen Wang · Jasleen Grewal · Huzefa Rangwala · Layne Price
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Workshop
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Protein Sequence Design in a Latent Space via Model-based Reinforcement Learning
Minji Lee · Luiz Felipe Vecchietti · Hyunkyu Jung · Hyunjoo Ro · Ho Min Kim · Meeyoung Cha
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Workshop
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Adversarial Attacks on Protein Language Models
Ginevra Carbone · Francesca Cuturello · Luca Bortolussi · Alberto Cazzaniga
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