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Workshop
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Joint Protein Sequence-Structure Co-Design via Equivariant Diffusion
Ria Vinod
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Poster
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Thu 9:00
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PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding
Minghao Xu · Zuobai Zhang · Jiarui Lu · Zhaocheng Zhu · Yangtian Zhang · Ma Chang · Runcheng Liu · Jian Tang
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Workshop
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Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models
Namrata Anand · Tudor Achim
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Workshop
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Masked inverse folding with sequence transfer for protein representation learning
Kevin Yang · Niccoló Zanichelli · Hugh Yeh
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Workshop
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A Benchmark Framework for Evaluating Structure-to-Sequence Models for Protein Design
Jeffrey Chan · Seyone Chithrananda · David Brookes · Sam Sinai
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Workshop
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Ligand-aware protein sequence design using protein self contacts
Jody Mou · Benjamin Fry · Chun-Chen Yao · Nicholas Polizzi
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Workshop
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Sat 7:15
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Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models
Namrata Anand · Tudor Achim
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Workshop
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EvoOpt: an MSA-guided, fully unsupervised sequence optimization pipeline for protein design
Hideki Yamaguchi · Yutaka Saito
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Workshop
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TranceptEVE: Combining Family-specific and Family-agnostic Models of Protein Sequences for Improved Fitness Prediction
Pascal Notin · Lodevicus van Niekerk · Aaron Kollasch · Daniel Ritter · Yarin Gal · Debora Marks
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Workshop
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Protein Sequence Design in a Latent Space via Model-based Reinforcement Learning
Minji Lee · Luiz Felipe Vecchietti · Hyunkyu Jung · Hyunjoo Ro · Ho Min Kim · Meeyoung Cha
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Workshop
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Sat 12:20
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Seq2MSA: A Language Model for Protein Sequence Diversification
Pascal Sturmfels · Roshan Rao · Robert Verkuil · Zeming Lin · Tom Sercu · Adam Lerer · Alex Rives
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Workshop
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Training self-supervised peptide sequence models on artificially chopped proteins
Gil Sadeh · Zichen Wang · Jasleen Grewal · Huzefa Rangwala · Layne Price
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